About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24053114_24055517_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24053114 - 24055517
Intron Length:
2404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
DAVRLCRFVKDQTMWACLAA
Intron Amino Acid Position:
613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.5
0.78
0.8
83.2
32
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
IFT80
Ensembl Gene ID:
ENSAPLG00000006299
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006589
24015419 - 24060684
45266