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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24053485_24055517_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24053485 - 24055517
Intron Length:
2033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
RFVKATATDEDQTMWACLAA
Intron Amino Acid Position:
619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.5
0.78
0.8
83.2
32
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
IFT80
Ensembl Gene ID:
ENSAPLG00000006299
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045057
24015419 - 24060044
44626