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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24073979_24074417_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
24073979 - 24074417
Intron Length:
439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTCGGAA
5'SS Class:
weak_major
3'SS Sequence:
TTTTGTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATGCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.4
0.08
1.4
52.8
40.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
89.2
0.88
0.7
81.2
36.5
Minor 5ss
35.6
-1.6
3.4
46.7
48.7
Minor BPS
48.3
-0
2.2
73.82
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006160
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006383
24073898 - 24083095
9198