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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24074450_24074659_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
24074450 - 24074659
Intron Length:
210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
CTTATCTGCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCCTCTTATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
69.1
0.43
0.9
64.7
36.4
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
65.4
0.56
1.6
80.81
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006160
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022480
24072656 - 24083310
10655
ENSAPLT00000006383
24073898 - 24083095
9198