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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24079017_24079591_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24079017 - 24079591
Intron Length:
575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGTTC
5'SS Class:
major
3'SS Sequence:
TTTAAAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTTTTAAAAT
Flanking Amino Acid:
VATNNESFIKDIAKAVKHSK
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
70
37.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76
0.59
1
71.6
42.6
Minor 5ss
34.5
-1.8
3.6
48.7
47.8
Minor BPS
58
0.33
1.8
75.95
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006160
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022480
24072656 - 24083310
10655
ENSAPLT00000006383
24073898 - 24083095
9198