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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24079727_24080040_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24079727 - 24080040
Intron Length:
314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TAACATTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTATTTTAAAC
Flanking Amino Acid:
CEPEAEVTPEEIEFVDGSLL
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.9
0.58
1
68.8
41.2
Minor 5ss
41.5
-0.9
2.7
53.7
43.5
Minor BPS
67.7
0.53
1.4
75.88
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006160
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022480
24072656 - 24083310
10655
ENSAPLT00000006383
24073898 - 24083095
9198