Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24082446_24082982_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

24082446 - 24082982

Intron Length:

537

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATCCACT

5'SS Class:

weak_major

3'SS Sequence:

TTCATTTCCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

TGTGTGTTCATT

Flanking Amino Acid:

VSYDIVQLLEGFMAQ*

Intron Amino Acid Position:

501

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.6

0.46

1.2

42.9

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

80.2

0.68

0.8

72.9

37.3

Minor 5ss

62.8

0.43

76.3

38.9

Minor BPS

44.7

-0.3

2.4

67.31

44.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006160

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022480

24072656 - 24083310

10655

ENSAPLT00000006383

24073898 - 24083095

9198