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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24087148_24087511_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24087148 - 24087511
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCGTT
5'SS Class:
strong_major
3'SS Sequence:
ATCCTTAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAATCCTTAATC
Flanking Amino Acid:
VLTSIDEMMKAMQPGSPGAL
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
79
35.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
72.4
0.51
1
66.9
37.7
Minor 5ss
44
-0.7
3.5
64.7
41
Minor BPS
81.9
0.98
1
80.81
33.2

Associated Gene:

Gene:
IL12A
Ensembl Gene ID:
ENSAPLG00000006147
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006365
24086992 - 24089346
2355