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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2408962_2410272_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2408962 - 2410272
Intron Length:
1311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTAGC
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTTGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
CATATTTTAAGA
Flanking Amino Acid:
ECLQGLLCTEVGVTSTNGDL
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
78.8
0.65
1
77.4
41.2
Minor 5ss
42.2
-0.9
2.5
54.4
42.8
Minor BPS
52.2
0.07
1.7
60.18
40.2

Associated Gene:

Gene:
TFDP2
Ensembl Gene ID:
ENSAPLG00000005603
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005801
2408920 - 2439973
31054