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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24270149_24270633_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24270149 - 24270633
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTTT
5'SS Class:
strong_major
3'SS Sequence:
CACTCTTTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTTTTTCACT
Flanking Amino Acid:
FSSQEASAIDSIVYIISAPM
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
82.9
29.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.5
0.62
0.8
72.7
31.7
Minor 5ss
55.6
0.19
2.5
75.5
40.6
Minor BPS
66.1
0.59
1.7
82.56
39.6

Associated Gene:

Gene:
MFSD1
Ensembl Gene ID:
ENSAPLG00000005507
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024665
24264219 - 24275890
11672
ENSAPLT00000005774
24265294 - 24293497
28204