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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24273451_24274078_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24273451 - 24274078
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTGTTTTATG
Flanking Amino Acid:
WLMEAGRLVFGIGGESLAVA
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78
38.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
81.3
0.7
0.7
80
25.4
Minor 5ss
37.4
-1.4
3
42
44.5
Minor BPS
52
-0
2.1
66.64
41.8

Associated Gene:

Gene:
MFSD1
Ensembl Gene ID:
ENSAPLG00000005507
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024665
24264219 - 24275890
11672
ENSAPLT00000005774
24265294 - 24293497
28204