About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24275412_24275544_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24275412 - 24275544
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGCGGGGC
5'SS Class:
major
3'SS Sequence:
CTTCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAG
U12 Branch Point Sequence:
TCCTCCTGAGGC
Flanking Amino Acid:
VLALMCFLGFGSYFCYDNPA
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.1
50.6
40.5
Major BPS
54.8
0.12
1.6
53.3
44.2
Major PPT
78.8
0.65
0.7
73.4
24.8
Minor 5ss
23.5
-3
3.5
31.7
43.1
Minor BPS
47.7
-0.1
2
58.78
46.1

Associated Gene:

Gene:
MFSD1
Ensembl Gene ID:
ENSAPLG00000005507
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024665
24264219 - 24275890
11672