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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24275412_24284194_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24275412 - 24284194
Intron Length:
8783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGAAG
5'SS Class:
major
3'SS Sequence:
CTTCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAG
U12 Branch Point Sequence:
TCCTCCTGAGGC
Flanking Amino Acid:
MQAVRGTETGSYFCYDNPA
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
65.6
41.7
Major BPS
54.8
0.12
1.6
53.3
44.2
Major PPT
78.8
0.65
0.7
73.4
24.8
Minor 5ss
24.8
-2.9
3.1
29.2
43.7
Minor BPS
47.7
-0.1
2
58.78
46.1

Associated Gene:

Gene:
MFSD1
Ensembl Gene ID:
ENSAPLG00000005507
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005774
24265294 - 24293497
28204