Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2427886_2432051_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2427886 - 2432051

Intron Length:

4166

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAA|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTACGTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

CTTTGCTAAACC

Flanking Amino Acid:

TVIDCSISSDKFEYLFNFDN

Intron Amino Acid Position:

304

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.2

0.9

0.8

88.1

25.2

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

82.6

0.73

0.9

78.1

35.3

Minor 5ss

40.3

-1.1

3.4

58.5

40.4

Minor BPS

58.7

0.25

2.1

73.88

43.5

Associated Gene:

Gene:

TFDP2

Ensembl Gene ID:

ENSAPLG00000005603

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030142

2404674 - 2439973

35300

ENSAPLT00000005801

2408920 - 2439973

31054