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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24284304_24293297_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
24284304 - 24293297
Intron Length:
8994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATACTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTTATACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
28.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.3
0.77
0.8
78.2
35.1
Minor 5ss
34.4
-1.8
3.3
49.3
46.9
Minor BPS
50.3
0.09
1.8
73.1
38.4

Associated Gene:

Gene:
MFSD1
Ensembl Gene ID:
ENSAPLG00000005507
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005774
24265294 - 24293497
28204