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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24319142_24319673_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24319142 - 24319673
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAAGA
5'SS Class:
major
3'SS Sequence:
CTTTGTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TTTTACTTAATG
Flanking Amino Acid:
KNELVAENIPDSYGNVPPEM
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
65.2
40.7
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
83.7
0.76
0.8
76.2
37.8
Minor 5ss
31.1
-2.2
3.2
40.8
45
Minor BPS
77.1
0.71
1.5
80.51
35.2

Associated Gene:

Gene:
LXN
Ensembl Gene ID:
ENSAPLG00000005337
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005514
24317411 - 24322607
5197