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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24319811_24321858_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24319811 - 24321858
Intron Length:
2048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATCTTATTT
Flanking Amino Acid:
LAQIKHVKQVKRSDEYLEFD
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.2
28.3
Major BPS
100
1.24
0.5
100
0
Major PPT
88
0.85
0.8
80.4
37
Minor 5ss
40.6
-1
2.8
49.4
41.4
Minor BPS
60.2
0.4
1.6
75.79
41.6

Associated Gene:

Gene:
LXN
Ensembl Gene ID:
ENSAPLG00000005337
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005514
24317411 - 24322607
5197