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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24322924_24323849_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24322924 - 24323849
Intron Length:
926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTCTATTTCATT
Flanking Amino Acid:
GELHLEIYAQRMEREYGCPC
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
71.6
40.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
93.3
0.97
0.6
89.3
19.4
Minor 5ss
39.7
-1.2
2.8
50.2
46
Minor BPS
49
0
1.9
67.74
44.1

Associated Gene:

Gene:
GFM1
Ensembl Gene ID:
ENSAPLG00000005022
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005220
24310956 - 24335418
24463