About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24323988_24324385_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24323988 - 24324385
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
AATTGTTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAATAT
U12 Branch Point Sequence:
GCACGTGTAATT
Flanking Amino Acid:
ISVAMKPSNKNDLDKFSKGL
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
67.5
0.44
1.1
63.7
42.3
Major PPT
77.1
0.61
0.9
74.3
40.5
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
41.5
-0.5
2.2
54.22
42

Associated Gene:

Gene:
GFM1
Ensembl Gene ID:
ENSAPLG00000005022
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005220
24310956 - 24335418
24463