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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24324443_24325114_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24324443 - 24325114
Intron Length:
672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTATCACTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TCGTCCTTTATC
Flanking Amino Acid:
TDKTSTDISMESIHIPDPVI
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
78.3
0.7
1
80
32.1
Major PPT
80.7
0.69
0.9
74.5
35
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
65.3
0.46
1.6
70.08
42

Associated Gene:

Gene:
GFM1
Ensembl Gene ID:
ENSAPLG00000005022
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005220
24310956 - 24335418
24463