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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24326755_24327835_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24326755 - 24327835
Intron Length:
1081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
EVENYAILNQGDSEDKAKFL
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
80.7
33.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
82
0.72
1
86.9
31.1
Minor 5ss
35.6
-1.6
2.6
35.6
40.5
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
GFM1
Ensembl Gene ID:
ENSAPLG00000005022
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005220
24310956 - 24335418
24463