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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24332938_24333570_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24332938 - 24333570
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCTATC
5'SS Class:
major
3'SS Sequence:
CTCACTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAT
U12 Branch Point Sequence:
TTTTCTTCAGCT
Flanking Amino Acid:
SSPARAVQQLRSKLKHNAAF
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
77.9
36.9
Major BPS
70.5
0.51
1.1
69.7
35.5
Major PPT
82.5
0.73
0.8
79.9
32
Minor 5ss
56.8
0.23
2.1
71.6
38.3
Minor BPS
67.3
0.62
1.8
88.32
36.9

Associated Gene:

Gene:
GFM1
Ensembl Gene ID:
ENSAPLG00000005022
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005220
24310956 - 24335418
24463