About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24334938_24335262_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24334938 - 24335262
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGGGAGGG
5'SS Class:
major
3'SS Sequence:
TCCCCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTAAA
U12 Branch Point Sequence:
CTTCCCTAAACC
Flanking Amino Acid:
GAGPAPRRDGLLLNACRHCS
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.1
47.7
43.1
Major BPS
60.4
0.26
1.1
61.5
32.5
Major PPT
83.5
0.75
0.7
75.7
32.8
Minor 5ss
22.5
-3.2
3.2
20
37.8
Minor BPS
67
0.51
1.7
75.89
40.7

Associated Gene:

Gene:
GFM1
Ensembl Gene ID:
ENSAPLG00000005022
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005220
24310956 - 24335418
24463