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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24356943_24358309_F

Intron Information:

Intron Rank:
145818
Intron Class:
major
Intron Phase:
Intron Coordinates:
24356943 - 24358309
Intron Length:
1367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
GTCTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAATAATTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
84
0.76
0.8
81
31
Minor 5ss
29.7
-2.3
2.6
33.7
41.6
Minor BPS
53
-0
1.8
60.2
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028580
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037433
24356346 - 24361715
5370