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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24363463_24364520_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24363463 - 24364520
Intron Length:
1058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAC
U12 Branch Point Sequence:
CCTACTTTACTT
Flanking Amino Acid:
QDDNSLAHPNLFIEKAEAEE
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
78.2
36.4
Major BPS
65.2
0.38
1
57.3
39.1
Major PPT
85.6
0.8
0.7
84.2
23.8
Minor 5ss
38.7
-1.3
3.4
53.8
43.6
Minor BPS
53.9
0.2
1.7
67.54
44.3

Associated Gene:

Gene:
RSRC1
Ensembl Gene ID:
ENSAPLG00000004783
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004945
24363370 - 24499172
135803