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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24364668_24365610_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24364668 - 24365610
Intron Length:
943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
TTGAGGATAAAA
Flanking Amino Acid:
TFRSSKEVKKSIEPAELKHE
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.2
1.16
0.6
97
9.5
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
89.2
0.88
0.6
88.7
20.6
Minor 5ss
46.1
-0.4
2.8
66.9
44.4
Minor BPS
38.7
-0.8
2.5
54.2
44

Associated Gene:

Gene:
RSRC1
Ensembl Gene ID:
ENSAPLG00000004783
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004945
24363370 - 24499172
135803