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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24365718_24420774_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24365718 - 24420774
Intron Length:
55057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
GTGTACTGACAT
Flanking Amino Acid:
ARLQLVLEAADQATLVEQVK
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
87.6
0.85
0.6
84.2
23.7
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
45.6
-0.2
2
64.26
45.2

Associated Gene:

Gene:
RSRC1
Ensembl Gene ID:
ENSAPLG00000004783
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004945
24363370 - 24499172
135803