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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24434780_24469187_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24434780 - 24469187
Intron Length:
34408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
CTATTTAGAACT
Flanking Amino Acid:
KEKEICGAKHGDPGNIKAGL
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.6
32.8
Major BPS
70
0.5
1
67
39.8
Major PPT
85
0.79
0.8
79.4
32.6
Minor 5ss
31.6
-2.1
3.1
31.7
42.6
Minor BPS
49.8
0.07
1.7
70.08
40.8

Associated Gene:

Gene:
RSRC1
Ensembl Gene ID:
ENSAPLG00000004783
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004945
24363370 - 24499172
135803