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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24492490_24494822_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24492490 - 24494822
Intron Length:
2333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTTTG
5'SS Class:
strong_major
3'SS Sequence:
GGTTTTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GGTGTACTAACA
Flanking Amino Acid:
LQSRSHSYDKRRRHRSSSSS
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
75
37.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
75.9
0.58
0.9
73.5
41.9
Minor 5ss
37.3
-1.4
3.1
48.8
47.4
Minor BPS
46
-0.3
2
58.67
40.4

Associated Gene:

Gene:
RSRC1
Ensembl Gene ID:
ENSAPLG00000004783
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004945
24363370 - 24499172
135803