Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24586943_24592287_R

Intron Information:

Intron Rank:

Intron Class:

minor

Intron Phase:

Intron Coordinates:

24586943 - 24592287

Intron Length:

5345

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTATCCTTT

5'SS Class:

strong_minor

3'SS Sequence:

CCCAAAATAACAG|G

3'SS Class:

minor_BPS

U2 Branch Point Sequence:

AGTTAAT

U12 Branch Point Sequence:

ACTTCCTTACCC

Flanking Amino Acid:

SFGVLFLDIFVTVQFLLYRQ

Intron Amino Acid Position:

323

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

50.9

0.02

1.2

57.1

42.4

Major BPS

75.6

0.64

1.1

75.7

36.5

Major PPT

55.2

0.12

47.3

37.8

Minor 5ss

98.8

1.64

0.5

12.5

Minor BPS

71.3

0.65

1.6

76.53

39.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004823

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004976

24586659 - 24600090

13432

ENSAPLT00000030545

24586659 - 24602405

15747

ENSAPLT00000028120

24586659 - 24600090

13432