Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24592474_24593156_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24592474 - 24593156

Intron Length:

683

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTAGT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTGTATTTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAACAT

U12 Branch Point Sequence:

TTTTCTGTAAAA

Flanking Amino Acid:

GSRFPQLYKNFRRRSTEGTS

Intron Amino Acid Position:

261

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

83.8

34.5

Major BPS

0.52

1.1

77.7

35.3

Major PPT

78.4

0.64

0.9

77.6

35.8

Minor 5ss

39.9

-1.1

2.9

56.1

41.4

Minor BPS

62.9

0.4

2.1

80.33

35.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004823

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030545

24586659 - 24602405

15747

ENSAPLT00000028120

24586659 - 24600090

13432

ENSAPLT00000004976

24586659 - 24600090

13432