About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24593253_24594171_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24593253 - 24594171
Intron Length:
919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TGTACCTTTATT
Flanking Amino Acid:
DQSSVLERSNTSLDMIEMSG
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
28.7
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
90.1
0.9
0.7
88.2
28.6
Minor 5ss
45.3
-0.5
2.8
64.3
39.9
Minor BPS
66.6
0.6
1.7
81.88
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004823
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030545
24586659 - 24602405
15747
ENSAPLT00000028120
24586659 - 24600090
13432
ENSAPLT00000004976
24586659 - 24600090
13432