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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24596147_24599978_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24596147 - 24599978
Intron Length:
3832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
GTGTACTGAACA
Flanking Amino Acid:
KKKDFLMISKTITAISYVNM
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
74.2
36.1
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
33.1
-1.9
3
43
37.7
Minor BPS
61
0.34
1.7
70.56
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004823
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030545
24586659 - 24602405
15747