Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24598369_24598494_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24598369 - 24598494

Intron Length:

126

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAACGGA

5'SS Class:

major

3'SS Sequence:

ATCTCCCCAATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCAAT

U12 Branch Point Sequence:

CTTTCAATATCT

Flanking Amino Acid:

EVFSQRIFGIETRRLCINGT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.7

0.49

1.1

58.4

40.9

Major BPS

76.9

0.67

1.2

31.9

Major PPT

64.8

0.33

0.9

59.8

30.6

Minor 5ss

35.2

-1.7

3.4

43.9

45.7

Minor BPS

50.6

0.1

2.2

78.25

43.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004823

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028120

24586659 - 24600090

13432