Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24600091_24601932_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24600091 - 24601932

Intron Length:

1842

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCGGTGTC

5'SS Class:

major

3'SS Sequence:

TTGTGTGGTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTCTTTTTTATT

Flanking Amino Acid:

WIRGAAAAVARSHDDSSLER

Intron Amino Acid Position:

158

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.1

0.52

1.3

74.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

67.5

0.39

1.1

65.8

45.3

Minor 5ss

31.3

-2.1

3.4

43.4

44.3

Minor BPS

62.3

0.47

1.6

78.5

38.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004823

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030545

24586659 - 24602405

15747