Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2462410_2467797_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2462410 - 2467797

Intron Length:

5388

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

TCTCCAATCATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TTATCTCCAATC

Flanking Amino Acid:

GEPYIQCTSKEQGMVEINYF

Intron Amino Acid Position:

188

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

1.2

81.4

33.4

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

68.3

0.41

0.8

62.2

32.1

Minor 5ss

38.3

-1.3

2.8

51.3

45.1

Minor BPS

52.6

0.06

1.8

68.28

37.3

Associated Gene:

Gene:

ATP1B3

Ensembl Gene ID:

ENSAPLG00000028873

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042755

2458812 - 2474917

16106