Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24624963_24638642_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24624963 - 24638642

Intron Length:

13680

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGAACA

5'SS Class:

strong_major

3'SS Sequence:

GCTCTGTTCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATACAC

U12 Branch Point Sequence:

ATACACTGAGTC

Flanking Amino Acid:

TDAIVKSVLQGNSMLLRVLP

Intron Amino Acid Position:

177

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.1

0.8

0.9

76.1

32.7

Major BPS

52.7

0.07

62.3

33.2

Major PPT

75.3

0.57

0.9

72.1

37.9

Minor 5ss

39.8

-1.1

2.8

Minor BPS

44.7

-0.4

1.7

53.8

37.1

Associated Gene:

Gene:

VEPH1

Ensembl Gene ID:

ENSAPLG00000004613

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038875

24618449 - 24682764

64316

ENSAPLT00000004732

24618449 - 24685985

67537