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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24633414_24633518_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24633414 - 24633518
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGACCTG
5'SS Class:
major
3'SS Sequence:
CGTCATCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACGTCAT
U12 Branch Point Sequence:
CCCACGTCATCT
Flanking Amino Acid:
MLQTMDDILKVEQALVRSSD
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.4
0.34
1.1
53
45.7
Major BPS
63.4
0.33
1.2
65.3
41.5
Major PPT
71.1
0.47
0.9
61.4
39.7
Minor 5ss
34
-1.8
3.5
46.2
49.1
Minor BPS
39.3
-0.7
2.3
52.13
48.4

Associated Gene:

Gene:
PTX3
Ensembl Gene ID:
ENSAPLG00000004626
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004748
24628961 - 24634171
5211