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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24633632_24634023_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24633632 - 24634023
Intron Length:
392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCATTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
AAAACCCTAAGT
Flanking Amino Acid:
IEGPVLGTEETSCDCQREHT
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
79.5
0.66
0.9
70.2
40.1
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
48.7
-0
2
66.62
43.1

Associated Gene:

Gene:
PTX3
Ensembl Gene ID:
ENSAPLG00000004626
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042004
24628961 - 24634171
5211
ENSAPLT00000004748
24628961 - 24634171
5211