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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24647270_24652848_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24647270 - 24652848
Intron Length:
5579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
TCTGCTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTAAA
U12 Branch Point Sequence:
TGTGCCAGAGCT
Flanking Amino Acid:
QLENDNVSAARTENDIEIES
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
61.3
0.28
1.1
61.7
34.1
Major PPT
77.8
0.63
0.8
76.7
32
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
47.1
-0.1
2.1
71.09
45

Associated Gene:

Gene:
VEPH1
Ensembl Gene ID:
ENSAPLG00000004613
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038875
24618449 - 24682764
64316
ENSAPLT00000004732
24618449 - 24685985
67537