Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24673201_24682249_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24673201 - 24682249

Intron Length:

9049

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TTCACCTCTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTAAC

U12 Branch Point Sequence:

GTGTGTTCACCT

Flanking Amino Acid:

FMCNNPEKATVVNQDGQPLM

Intron Amino Acid Position:

709

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

0.9

74.9

35.3

Major BPS

0.45

0.9

67.6

25.3

Major PPT

79.5

0.66

0.8

73.4

31.4

Minor 5ss

29.4

-2.4

3.1

33.3

41.7

Minor BPS

-0.3

2.2

64.33

46.2

Associated Gene:

Gene:

VEPH1

Ensembl Gene ID:

ENSAPLG00000004613

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038875

24618449 - 24682764

64316

ENSAPLT00000004732

24618449 - 24685985

67537