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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2467849_2468586_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2467849 - 2468586
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TTCTTTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AATATTTTAACT
Flanking Amino Acid:
TPCVLVKMNRIIGLKPEGEP
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.5
37.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
86.1
0.81
0.6
85.6
21.8
Minor 5ss
36.6
-1.5
3.3
47.2
42.3
Minor BPS
70.6
0.73
1.2
79.98
35.5

Associated Gene:

Gene:
ATP1B3
Ensembl Gene ID:
ENSAPLG00000028873
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042755
2458812 - 2474917
16106