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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2468775_2469897_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2468775 - 2469897
Intron Length:
1123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCTTTCATA
Flanking Amino Acid:
YVSTLKKFLESYDDSKQSEN
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
80
34.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87
0.83
0.6
84
24.2
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
71.1
0.66
1.7
82.68
32.7

Associated Gene:

Gene:
ATP1B3
Ensembl Gene ID:
ENSAPLG00000028873
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042755
2458812 - 2474917
16106