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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24710095_24710224_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24710095 - 24710224
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTATT
5'SS Class:
strong_major
3'SS Sequence:
AATTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TAATCTCTAATT
Flanking Amino Acid:
CIYLAARALQIPLPTRPHWF
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
91.1
28.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
81.2
0.7
0.9
77.7
40.7
Minor 5ss
40.6
-1.1
3.1
59.8
44.7
Minor BPS
64.1
0.52
1.6
78.87
37.1

Associated Gene:

Gene:
CCNL1
Ensembl Gene ID:
ENSAPLG00000010427
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010881
24701093 - 24712596
11504