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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24710747_24711686_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24710747 - 24711686
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGCTTG
5'SS Class:
major
3'SS Sequence:
TTTAAATTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TAATCTTGAATT
Flanking Amino Acid:
LGGFSPASKPSSPREVKTEE
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
71.7
40.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
76.6
0.6
0.9
70.7
39.6
Minor 5ss
49.9
-0
2.8
69.2
41.7
Minor BPS
68
0.64
1.3
79.1
36.8

Associated Gene:

Gene:
CCNL1
Ensembl Gene ID:
ENSAPLG00000010427
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010881
24701093 - 24712596
11504