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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24711799_24711952_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
24711799 - 24711952
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTGAA
5'SS Class:
major
3'SS Sequence:
CCCCCACCCAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTGTAAC
U12 Branch Point Sequence:
GTAACCCTACTT
Flanking Amino Acid:
RQQASKSPYNGMRKESKRSR
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
68.5
38.7
Major BPS
56.8
0.17
1.4
61.4
43.2
Major PPT
53.2
0.07
0.9
51.5
23.5
Minor 5ss
30.2
-2.3
3.3
30.7
43.3
Minor BPS
48
-0
2
67.4
43

Associated Gene:

Gene:
CCNL1
Ensembl Gene ID:
ENSAPLG00000010427
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010881
24701093 - 24712596
11504