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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24730803_24731742_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24730803 - 24731742
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTGAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTCGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
ACTTACGCAACA
Flanking Amino Acid:
QRDHEELQKKIPGLISSATN
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
73.6
30.4
Major BPS
62
0.3
1
53
34.1
Major PPT
75.8
0.58
1
70.1
40.8
Minor 5ss
33.6
-1.9
3.1
42.4
45.1
Minor BPS
46.4
-0.2
2.3
63.04
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010703
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021103
24727626 - 24778373
50748
ENSAPLT00000044078
24727626 - 24778373
50748
ENSAPLT00000018256
24727626 - 24777921
50296
ENSAPLT00000036921
24727626 - 24777921
50296
ENSAPLT00000011161
24727626 - 24762883
35258
ENSAPLT00000029872
24727626 - 24778373
50748
ENSAPLT00000027332
24727626 - 24753026
25401