Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24731896_24735267_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24731896 - 24735267

Intron Length:

3372

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACGCTG

5'SS Class:

major

3'SS Sequence:

GCTTGTTCCCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAAAAC

U12 Branch Point Sequence:

ACGTCGTTAAAA

Flanking Amino Acid:

MRNEDNWREKMEIDLAKGEA

Intron Amino Acid Position:

377

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

1.2

64.3

47.1

Major BPS

60.7

0.27

1.1

67.6

34.6

Major PPT

69.9

0.45

0.9

61.8

Minor 5ss

39.9

-1.1

3.4

55.8

48.4

Minor BPS

51.3

0.04

2.2

62.71

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010703

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018256

24727626 - 24777921

50296

ENSAPLT00000036921

24727626 - 24777921

50296

ENSAPLT00000011161

24727626 - 24762883

35258

ENSAPLT00000029872

24727626 - 24778373

50748

ENSAPLT00000027332

24727626 - 24753026

25401

ENSAPLT00000021103

24727626 - 24778373

50748

ENSAPLT00000044078

24727626 - 24778373

50748