About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24735362_24737011_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24735362 - 24737011
Intron Length:
1650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCAGA
5'SS Class:
major
3'SS Sequence:
TTGTGGTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ACGTATTTACAT
Flanking Amino Acid:
EEEVVMLKQERELMLISHQN
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
68.9
43.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
74.3
0.55
1
65.8
45.3
Minor 5ss
44.3
-0.6
2.7
58.2
46
Minor BPS
46.3
-0.2
1.8
60.01
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010703
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027332
24727626 - 24753026
25401
ENSAPLT00000021103
24727626 - 24778373
50748
ENSAPLT00000044078
24727626 - 24778373
50748
ENSAPLT00000018256
24727626 - 24777921
50296
ENSAPLT00000036921
24727626 - 24777921
50296
ENSAPLT00000011161
24727626 - 24762883
35258
ENSAPLT00000029872
24727626 - 24778373
50748