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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24737216_24737503_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24737216 - 24737503
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCATCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTCTTTTCATT
Flanking Amino Acid:
MKYENGISESRLTKELKEKE
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
30.6
Major BPS
100
1.24
0.5
100
0
Major PPT
77
0.61
0.8
71.5
33.9
Minor 5ss
34.7
-1.7
3.3
50.4
46
Minor BPS
53.6
0.19
1.7
71.97
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010703
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027332
24727626 - 24753026
25401
ENSAPLT00000021103
24727626 - 24778373
50748
ENSAPLT00000044078
24727626 - 24778373
50748
ENSAPLT00000018256
24727626 - 24777921
50296
ENSAPLT00000036921
24727626 - 24777921
50296
ENSAPLT00000011161
24727626 - 24762883
35258
ENSAPLT00000029872
24727626 - 24778373
50748